PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000262032
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 339aa    MW: 38010.6 Da    PI: 8.7992
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000262032genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.59e-52141391128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    lppGfrF Ptdeel+v+yL++kv+g +++l ++i+e+d+yk++Pw Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg+dk +++ +
  MDP0000262032  14 LPPGFRFYPTDEELLVQYLCRKVAGYQFNL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGTGYWKATGTDKVITT-E 107
                    79****************************.89***************7777799*************************************99.9 PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                    g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  MDP0000262032 108 GRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139
                    99****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-6610162IPR003441NAC domain
PROSITE profilePS5100559.98114162IPR003441NAC domain
PfamPF023651.0E-2515139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGVPETDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGYQ FNLQIIAEID LYKFDPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GTGYWKATGT DKVITTEGRK VGIKKALVFY  120
VGKAPKGTKT NWIMHEYRLI EPSRKNGSSK LDEWVLCRIY KKSSSSAAAA AAAAQKPVTS  180
VSSKEHSNGS SSSCSSQLDD VLEWLPDIDD RNFTLPRINS LKTLLQQQED SKINFQNTGS  240
GNFDWATLAG LNSAPELNLN NQTQQGQGQM NFNFNNNDVP PFNPTSLPRG MAAGEFGKTA  300
EEEVQSGLRT QRVDNSNFFQ QHSQNVCYPV RPSGFGHWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-11111664169NAC domain-containing protein 19
4dul_A1e-11111664169NAC domain-containing protein 19
1ut7_B1e-11111664169NO APICAL MERISTEM PROTEIN
1ut7_A1e-11111664169NO APICAL MERISTEM PROTEIN
1ut4_B1e-11111664169NO APICAL MERISTEM PROTEIN
1ut4_A1e-11111664169NO APICAL MERISTEM PROTEIN
3swp_D1e-11111667172NAC domain-containing protein 19
3swp_C1e-11111667172NAC domain-containing protein 19
3swp_B1e-11111667172NAC domain-containing protein 19
3swp_A1e-11111667172NAC domain-containing protein 19
3swm_D1e-11111667172NAC domain-containing protein 19
3swm_C1e-11111667172NAC domain-containing protein 19
3swm_B1e-11111667172NAC domain-containing protein 19
3swm_A1e-11111667172NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.79160.0fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981170.0KF198117.1 Malus hupehensis NAC domain protein (NAC33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008345087.10.0PREDICTED: NAC domain-containing protein 72-like
SwissprotQ93VY31e-132NAC72_ARATH; NAC domain-containing protein 72
TrEMBLS5R6370.0S5R637_9R
STRINGPOPTR_0011s12400.11e-155(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44293360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-125NAC family protein